IL_6XIQ_092

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

6XIQ|1|1|A|2468, 6XIQ|1|1|G|2477, 6XIQ|1|1|C|2478, 6XIQ|1|1|A|2480, 6XIQ|1|1|G|2481, 6XIQ|1|1|A|2484, 6XIQ|1|1|A|2486, 6XIQ|1|1|U|2487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|G|2466
6XIQ|1|1|G|2467
6XIQ|1|1|A|2468
6XIQ|1|1|G|2469
*
6XIQ|1|1|C|2476
6XIQ|1|1|G|2477
6XIQ|1|1|C|2478
6XIQ|1|1|C|2479
6XIQ|1|1|A|2480
6XIQ|1|1|G|2481
6XIQ|1|1|U|2482
6XIQ|1|1|G|2483
6XIQ|1|1|A|2484
6XIQ|1|1|A|2485
6XIQ|1|1|A|2486
6XIQ|1|1|U|2487
6XIQ|1|1|A|2488
6XIQ|1|1|C|2489

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain AP

RPS25A isoform 1

Chain L1

RPL1A isoform 1

Chain v

Rps5p