IL_6XIQ_098

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGUCAAG*CGACAUU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|A|2833
6XIQ|1|1|G|2834
6XIQ|1|1|U|2835
6XIQ|1|1|C|2836
6XIQ|1|1|A|2837
6XIQ|1|1|A|2838
6XIQ|1|1|G|2839
*
6XIQ|1|1|C|2849
6XIQ|1|1|G|2850
6XIQ|1|1|A|2851
6XIQ|1|1|C|2852
6XIQ|1|1|A|2853
6XIQ|1|1|U|2854
6XIQ|1|1|U|2855

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain I

RPL10 isoform 1

Chain m

60S ribosomal protein L40