IL_6XIQ_105

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAUA*UAGAACG

Length

12 nucleotides

Bulged bases

6XIQ|1|1|A|3142, 6XIQ|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|C|3004
6XIQ|1|1|A|3005
6XIQ|1|1|A|3006
6XIQ|1|1|U|3007
6XIQ|1|1|A|3008
*
6XIQ|1|1|U|3138
6XIQ|1|1|A|3139
6XIQ|1|1|G|3140
6XIQ|1|1|A|3141
6XIQ|1|1|A|3142
6XIQ|1|1|C|3143
6XIQ|1|1|G|3144

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1

Chain O

60S ribosomal protein L16-A