IL_6XIQ_129

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_129 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.5914

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6XIQ|1|2|U|117
6XIQ|1|2|U|118
6XIQ|1|2|A|119
6XIQ|1|2|U|120
6XIQ|1|2|U|121
6XIQ|1|2|U|122
*
6XIQ|1|2|A|295
6XIQ|1|2|U|296
6XIQ|1|2|U|297
6XIQ|1|2|C|298
6XIQ|1|2|A|299

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain u

40S ribosomal protein S4-A

Chain y

RPS8A isoform 1