IL_6XIQ_165

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6XIQ|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_165 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1625

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6XIQ|1|2|G|867
6XIQ|1|2|G|868
6XIQ|1|2|A|869
6XIQ|1|2|C|870
*
6XIQ|1|2|G|957
6XIQ|1|2|U|958
6XIQ|1|2|U|959
6XIQ|1|2|U|960
6XIQ|1|2|U|961

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S13

Chain AR

40S ribosomal protein S27-A