IL_6XIQ_199

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_199 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2117

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6XIQ|1|2|G|1540
6XIQ|1|2|G|1541
6XIQ|1|2|G|1542
6XIQ|1|2|A|1543
6XIQ|1|2|U|1544
6XIQ|1|2|A|1545
*
6XIQ|1|2|U|1566
6XIQ|1|2|U|1567
6XIQ|1|2|C|1568
6XIQ|1|2|A|1569
6XIQ|1|2|A|1570
6XIQ|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S18-A

Chain AJ

40S ribosomal protein S19-A

Chain v

Rps5p