IL_6XIQ_208

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_208 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.3988

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6XIQ|1|2|C|1675
6XIQ|1|2|U|1676
6XIQ|1|2|C|1677
6XIQ|1|2|A|1678
*
6XIQ|1|2|U|1723
6XIQ|1|2|U|1724
6XIQ|1|2|U|1725
6XIQ|1|2|G|1726

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

RPL24A isoform 1

Chain w

40S ribosomal protein S6-A

Chain y

RPS8A isoform 1