IL_6XIQ_209

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGGAUC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|2|A|1678
6XIQ|1|2|G|1679
6XIQ|1|2|G|1680
6XIQ|1|2|A|1681
6XIQ|1|2|U|1682
6XIQ|1|2|C|1683
*
6XIQ|1|2|G|1718
6XIQ|1|2|A|1719
6XIQ|1|2|G|1720
6XIQ|1|2|A|1721
6XIQ|1|2|A|1722
6XIQ|1|2|U|1723

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

RPL24A isoform 1

Chain w

40S ribosomal protein S6-A

Chain y

RPS8A isoform 1