IL_6XIQ_214
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UCUCC*GAUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_214 not in the Motif Atlas
- Homologous match to IL_5TBW_376
- Geometric discrepancy: 0.3624
- The information below is about IL_5TBW_376
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.9
- Basepair signature
- cWW-cSH-cWS-tSW-L-R-cWW-R
- Number of instances in this motif group
- 9
Unit IDs
6XIQ|1|3|U|32
6XIQ|1|3|C|33
6XIQ|1|3|U|34
6XIQ|1|3|C|35
6XIQ|1|3|C|36
*
6XIQ|1|3|G|41
6XIQ|1|3|A|42
6XIQ|1|3|U|43
6XIQ|1|3|C|44
6XIQ|1|3|A|45
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- RPL5 isoform 1
- Chain J
- RPL11B isoform 1
Coloring options: