IL_6XIQ_229

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAUAGAG*CUUUAUAG

Length

15 nucleotides

Bulged bases

6XIQ|1|1|U|2498, 6XIQ|1|1|A|2502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|C|2444
6XIQ|1|1|A|2445
6XIQ|1|1|U|2446
6XIQ|1|1|A|2447
6XIQ|1|1|G|2448
6XIQ|1|1|A|2449
6XIQ|1|1|G|2450
*
6XIQ|1|1|C|2496
6XIQ|1|1|U|2497
6XIQ|1|1|U|2498
6XIQ|1|1|U|2499
6XIQ|1|1|A|2500
6XIQ|1|1|U|2501
6XIQ|1|1|A|2502
6XIQ|1|1|G|2503

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain L1

RPL1A isoform 1

Chain i

60S ribosomal protein L36-A

Chain r

RPS1A isoform 1