IL_6XIQ_236
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCAGGC*GC
- Length
- 8 nucleotides
- Bulged bases
- 6XIQ|1|1|C|3217, 6XIQ|1|1|A|3218, 6XIQ|1|1|G|3219
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_236 not in the Motif Atlas
- Geometric match to IL_5TBW_101
- Geometric discrepancy: 0.2856
- The information below is about IL_5TBW_101
- Detailed Annotation
- Single stack bend with bulge
- Broad Annotation
- Single stack bend with bulge
- Motif group
- IL_39137.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6XIQ|1|1|G|3216
6XIQ|1|1|C|3217
6XIQ|1|1|A|3218
6XIQ|1|1|G|3219
6XIQ|1|1|G|3220
6XIQ|1|1|C|3221
*
6XIQ|1|1|G|3264
6XIQ|1|1|C|3265
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain P
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L33-A
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