IL_6XIQ_240

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6XIQ|1|2|U|320, 6XIQ|1|2|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_240 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.3325

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6XIQ|1|2|U|318
6XIQ|1|2|U|319
6XIQ|1|2|U|320
6XIQ|1|2|C|321
6XIQ|1|2|G|322
6XIQ|1|2|A|323
*
6XIQ|1|2|U|345
6XIQ|1|2|G|346

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AB

40S ribosomal protein S11-A

Chain y

RPS8A isoform 1