IL_6XIQ_242

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGGGCC*GUCUU

Length

11 nucleotides

Bulged bases

6XIQ|1|2|G|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|2|A|485
6XIQ|1|2|G|486
6XIQ|1|2|G|487
6XIQ|1|2|G|488
6XIQ|1|2|C|489
6XIQ|1|2|C|490
*
6XIQ|1|2|G|498
6XIQ|1|2|U|499
6XIQ|1|2|C|500
6XIQ|1|2|U|501
6XIQ|1|2|U|502

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AU

40S ribosomal protein S30-A

Chain z

40S ribosomal protein S9-A