IL_6XIQ_265

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGCA*UG

Length

6 nucleotides

Bulged bases

6XIQ|1|2|G|1273, 6XIQ|1|2|C|1274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_265 not in the Motif Atlas

Geometric match to IL_1FUF_002

Geometric discrepancy: 0.3967

The information below is about IL_1FUF_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6XIQ|1|2|U|1272
6XIQ|1|2|G|1273
6XIQ|1|2|C|1274
6XIQ|1|2|A|1275
*
6XIQ|1|2|U|1437
6XIQ|1|2|G|1438

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AK

RPS20 isoform 1

Chain AZ

Transfer RNA; tRNA

Chain t

RPS3 isoform 1