IL_6XIR_005
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 6XIR|1|1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_005 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.0769
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6XIR|1|1|C|31
6XIR|1|1|U|32
6XIR|1|1|G|33
6XIR|1|1|A|34
6XIR|1|1|A|35
6XIR|1|1|C|36
6XIR|1|1|U|37
6XIR|1|1|U|38
*
6XIR|1|1|A|45
6XIR|1|1|U|46
6XIR|1|1|C|47
6XIR|1|1|A|48
6XIR|1|1|A|49
6XIR|1|1|U|50
6XIR|1|1|A|51
6XIR|1|1|A|52
6XIR|1|1|G|53
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain j
- 60S ribosomal protein L37-A
- Chain o
- 60S ribosomal protein L42-A
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