3D structure

PDB id
6XIR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGAACUU*AUCAAUAAG
Length
17 nucleotides
Bulged bases
6XIR|1|1|A|49
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XIR_005 not in the Motif Atlas
Homologous match to IL_5TBW_005
Geometric discrepancy: 0.0769
The information below is about IL_5TBW_005
Detailed Annotation
tSH-tHW-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_35728.2
Basepair signature
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6XIR|1|1|C|31
6XIR|1|1|U|32
6XIR|1|1|G|33
6XIR|1|1|A|34
6XIR|1|1|A|35
6XIR|1|1|C|36
6XIR|1|1|U|37
6XIR|1|1|U|38
*
6XIR|1|1|A|45
6XIR|1|1|U|46
6XIR|1|1|C|47
6XIR|1|1|A|48
6XIR|1|1|A|49
6XIR|1|1|U|50
6XIR|1|1|A|51
6XIR|1|1|A|52
6XIR|1|1|G|53

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain L
60S ribosomal protein L13-A
Chain N
60S ribosomal protein L15-A
Chain a
60S ribosomal protein L28
Chain j
60S ribosomal protein L37-A
Chain o
60S ribosomal protein L42-A

Coloring options:


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