IL_6XIR_007

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUUGAAA*UAAUU

Length

13 nucleotides

Bulged bases

6XIR|1|1|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|1|A|116
6XIR|1|1|U|117
6XIR|1|1|U|118
6XIR|1|1|U|119
6XIR|1|1|G|120
6XIR|1|1|A|121
6XIR|1|1|A|122
6XIR|1|1|A|123
*
6XIR|1|1|U|149
6XIR|1|1|A|150
6XIR|1|1|A|151
6XIR|1|1|U|152
6XIR|1|1|U|153

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain G

RPL8A isoform 1

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A

Chain i

60S ribosomal protein L36-A