IL_6XIR_008

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

6XIR|1|1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_008 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.1365

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6XIR|1|1|A|123
6XIR|1|1|U|124
*
6XIR|1|1|A|144
6XIR|1|1|G|145
6XIR|1|1|U|146
6XIR|1|1|U|147
6XIR|1|1|G|148
6XIR|1|1|U|149

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain G

RPL8A isoform 1

Chain N

60S ribosomal protein L15-A