IL_6XIR_031

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

6XIR|1|1|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_031 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.1311

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6XIR|1|1|G|833
6XIR|1|1|U|834
*
6XIR|1|1|G|859
6XIR|1|1|G|860
6XIR|1|1|C|861

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L19-A

Chain p

60S ribosomal protein L43-A