3D structure

PDB id
6XIR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XIR_032 not in the Motif Atlas
Geometric match to IL_4WF9_024
Geometric discrepancy: 0.1088
The information below is about IL_4WF9_024
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

6XIR|1|1|U|834
6XIR|1|1|G|835
6XIR|1|1|A|836
6XIR|1|1|A|837
6XIR|1|1|G|838
*
6XIR|1|1|U|855
6XIR|1|1|G|856
6XIR|1|1|G|857
6XIR|1|1|A|858
6XIR|1|1|G|859

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain R
60S ribosomal protein L19-A
Chain p
60S ribosomal protein L43-A

Coloring options:


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