IL_6XIR_037

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_037 not in the Motif Atlas

Homologous match to IL_8C3A_038

Geometric discrepancy: 0.1118

The information below is about IL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6XIR|1|1|C|969
6XIR|1|1|A|970
*
6XIR|1|1|U|1111
6XIR|1|1|A|1112
6XIR|1|1|G|1113

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L18-A

Chain T

60S ribosomal protein L21-A

Chain a

60S ribosomal protein L28

Chain b

RPL29 isoform 1