IL_6XIR_043

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_043 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.1293

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6XIR|1|1|A|1006
6XIR|1|1|U|1007
6XIR|1|1|U|1008
6XIR|1|1|A|1009
*
6XIR|1|1|U|1041
6XIR|1|1|U|1042
6XIR|1|1|C|1043
6XIR|1|1|U|1044

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain I

RPL10 isoform 1