IL_6XIR_044

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_044 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.1931

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6XIR|1|1|A|1009
6XIR|1|1|G|1010
6XIR|1|1|A|1011
*
6XIR|1|1|U|1039
6XIR|1|1|A|1040
6XIR|1|1|U|1041

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain D

RPL5 isoform 1

Chain I

RPL10 isoform 1