IL_6XIR_056

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUCUAGACAG*CCGAAU

Length

16 nucleotides

Bulged bases

6XIR|1|1|A|1221, 6XIR|1|1|G|1222

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|1|A|1217
6XIR|1|1|U|1218
6XIR|1|1|C|1219
6XIR|1|1|U|1220
6XIR|1|1|A|1221
6XIR|1|1|G|1222
6XIR|1|1|A|1223
6XIR|1|1|C|1224
6XIR|1|1|A|1225
6XIR|1|1|G|1226
*
6XIR|1|1|C|1283
6XIR|1|1|C|1284
6XIR|1|1|G|1285
6XIR|1|1|A|1286
6XIR|1|1|A|1287
6XIR|1|1|U|1288

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain H

RPL9A isoform 1

Chain S

60S ribosomal protein L20-A