IL_6XIR_080

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_080 not in the Motif Atlas

Homologous match to IL_8P9A_309

Geometric discrepancy: 0.5657

The information below is about IL_8P9A_309

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73355.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6XIR|1|1|G|1947
6XIR|1|1|G|1948
*
6XIR|1|1|C|2098
6XIR|1|1|A|2099
6XIR|1|1|A|2100
6XIR|1|1|C|2101

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A