IL_6XIR_085

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6XIR|1|1|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_085 not in the Motif Atlas

Homologous match to IL_8P9A_314

Geometric discrepancy: 0.5822

The information below is about IL_8P9A_314

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6XIR|1|1|C|2204
6XIR|1|1|U|2205
6XIR|1|1|G|2206
*
6XIR|1|1|C|2237
6XIR|1|1|G|2238

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

60S ribosomal protein L2-A

Chain AX

Transfer RNA; tRNA