IL_6XIR_094

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6XIR|1|1|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_094 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0873

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6XIR|1|1|U|2423
6XIR|1|1|A|2424
6XIR|1|1|G|2425
*
6XIR|1|1|U|2604
6XIR|1|1|G|2605
6XIR|1|1|G|2606
6XIR|1|1|G|2607

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain N

60S ribosomal protein L15-A

Chain o

60S ribosomal protein L42-A