IL_6XIR_098

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

6XIR|1|1|A|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_098 not in the Motif Atlas

Homologous match to IL_5TBW_098

Geometric discrepancy: 0.0842

The information below is about IL_5TBW_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6XIR|1|1|G|2614
6XIR|1|1|G|2615
*
6XIR|1|1|C|2625
6XIR|1|1|A|2626
6XIR|1|1|C|2627

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain I

RPL10 isoform 1

Chain T

60S ribosomal protein L21-A

Chain b

RPL29 isoform 1

Chain o

60S ribosomal protein L42-A