IL_6XIR_103

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_103 not in the Motif Atlas

Homologous match to IL_5TBW_104

Geometric discrepancy: 0.1778

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6XIR|1|1|U|2826
6XIR|1|1|U|2827
6XIR|1|1|G|2828
*
6XIR|1|1|U|2862
6XIR|1|1|G|2863

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain AZ

Transfer RNA; tRNA

Chain I

RPL10 isoform 1