IL_6XIR_119

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

6XIR|1|1|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|1|A|3103
6XIR|1|1|U|3104
6XIR|1|1|U|3105
6XIR|1|1|A|3106
6XIR|1|1|U|3107
*
6XIR|1|1|A|3127
6XIR|1|1|G|3128
6XIR|1|1|A|3129
6XIR|1|1|A|3130
6XIR|1|1|U|3131

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain H

RPL9A isoform 1

Chain O

60S ribosomal protein L16-A