IL_6XIR_139

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUAAG*CUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_139 not in the Motif Atlas

Homologous match to IL_4V88_389

Geometric discrepancy: 0.5168

The information below is about IL_4V88_389

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61299.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6XIR|1|2|U|58
6XIR|1|2|C|59
6XIR|1|2|U|60
6XIR|1|2|A|61
6XIR|1|2|A|62
6XIR|1|2|G|63
*
6XIR|1|2|C|87
6XIR|1|2|U|88
6XIR|1|2|G|89

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain w

40S ribosomal protein S6-A