IL_6XIR_165

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6XIR|1|2|C|566, 6XIR|1|2|G|577, 6XIR|1|2|U|581, 6XIR|1|2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|G|562
6XIR|1|2|U|563
6XIR|1|2|G|564
6XIR|1|2|C|565
6XIR|1|2|C|566
6XIR|1|2|A|567
6XIR|1|2|G|568
*
6XIR|1|2|C|575
6XIR|1|2|G|576
6XIR|1|2|G|577
6XIR|1|2|U|578
6XIR|1|2|A|579
6XIR|1|2|A|580
6XIR|1|2|U|581
6XIR|1|2|U|582
6XIR|1|2|C|583

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain AZ

Transfer RNA; tRNA

Chain t

RPS3 isoform 1