IL_6XIR_178
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 6XIR|1|2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_178 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.23
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6XIR|1|2|U|893
6XIR|1|2|U|894
6XIR|1|2|G|895
6XIR|1|2|U|896
6XIR|1|2|C|897
6XIR|1|2|A|898
6XIR|1|2|G|899
*
6XIR|1|2|C|910
6XIR|1|2|U|911
6XIR|1|2|U|912
6XIR|1|2|G|913
6XIR|1|2|G|914
6XIR|1|2|A|915
6XIR|1|2|U|916
6XIR|1|2|U|917
6XIR|1|2|U|918
6XIR|1|2|A|919
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- 60S ribosomal protein L2-A
- Chain AE
- 40S ribosomal protein S14-B
- Chain r
- RPS1A isoform 1
Coloring options: