IL_6XIR_186

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

6XIR|1|2|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_186 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.2045

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6XIR|1|2|G|1149
6XIR|1|2|G|1150
6XIR|1|2|A|1151
*
6XIR|1|2|U|1627
6XIR|1|2|U|1628

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AQ

RPS26B isoform 1