IL_6XIR_191
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCAUGGC*GUCUGUGAUGC
- Length
- 20 nucleotides
- Bulged bases
- 6XIR|1|2|C|1274, 6XIR|1|2|U|1432, 6XIR|1|2|G|1435, 6XIR|1|2|G|1438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIR|1|2|G|1271
6XIR|1|2|U|1272
6XIR|1|2|G|1273
6XIR|1|2|C|1274
6XIR|1|2|A|1275
6XIR|1|2|U|1276
6XIR|1|2|G|1277
6XIR|1|2|G|1278
6XIR|1|2|C|1279
*
6XIR|1|2|G|1429
6XIR|1|2|U|1430
6XIR|1|2|C|1431
6XIR|1|2|U|1432
6XIR|1|2|G|1433
6XIR|1|2|U|1434
6XIR|1|2|G|1435
6XIR|1|2|A|1436
6XIR|1|2|U|1437
6XIR|1|2|G|1438
6XIR|1|2|C|1439
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein S10-A
- Chain AG
- 40S ribosomal protein S16-A
- Chain AK
- RPS20 isoform 1
- Chain AT
- RPS29A isoform 1
- Chain AZ
- Transfer RNA; tRNA
- Chain t
- RPS3 isoform 1
Coloring options: