IL_6XIR_193
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUGG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_193 not in the Motif Atlas
- Geometric match to IL_9JA9_001
- Geometric discrepancy: 0.3883
- The information below is about IL_9JA9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.6
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6XIR|1|2|G|1288
6XIR|1|2|U|1289
6XIR|1|2|U|1290
6XIR|1|2|G|1291
6XIR|1|2|G|1292
*
6XIR|1|2|C|1323
6XIR|1|2|G|1324
6XIR|1|2|A|1325
6XIR|1|2|A|1326
6XIR|1|2|C|1327
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AH
- 40S ribosomal protein S17-B
- Chain q
- 40S ribosomal protein S0-A
- Chain s
- RPS2 isoform 1
- Chain t
- RPS3 isoform 1
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