IL_6XIR_193

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUGG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|G|1288
6XIR|1|2|U|1289
6XIR|1|2|U|1290
6XIR|1|2|G|1291
6XIR|1|2|G|1292
*
6XIR|1|2|C|1323
6XIR|1|2|G|1324
6XIR|1|2|A|1325
6XIR|1|2|A|1326
6XIR|1|2|C|1327

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S17-B

Chain q

40S ribosomal protein S0-A

Chain s

RPS2 isoform 1

Chain t

RPS3 isoform 1