IL_6XIR_200

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCUAACCUUG*CUUGGUAAUC

Length

21 nucleotides

Bulged bases

6XIR|1|2|U|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|G|1488
6XIR|1|2|U|1489
6XIR|1|2|C|1490
6XIR|1|2|U|1491
6XIR|1|2|A|1492
6XIR|1|2|A|1493
6XIR|1|2|C|1494
6XIR|1|2|C|1495
6XIR|1|2|U|1496
6XIR|1|2|U|1497
6XIR|1|2|G|1498
*
6XIR|1|2|C|1509
6XIR|1|2|U|1510
6XIR|1|2|U|1511
6XIR|1|2|G|1512
6XIR|1|2|G|1513
6XIR|1|2|U|1514
6XIR|1|2|A|1515
6XIR|1|2|A|1516
6XIR|1|2|U|1517
6XIR|1|2|C|1518

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S10-A

Chain AJ

40S ribosomal protein S19-A

Chain AK

RPS20 isoform 1

Chain AT

RPS29A isoform 1

Chain t

RPS3 isoform 1