IL_6XIR_207

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_207 not in the Motif Atlas

Geometric match to IL_3DIL_002

Geometric discrepancy: 0.3741

The information below is about IL_3DIL_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6XIR|1|2|C|1675
6XIR|1|2|U|1676
6XIR|1|2|C|1677
6XIR|1|2|A|1678
*
6XIR|1|2|U|1723
6XIR|1|2|U|1724
6XIR|1|2|U|1725
6XIR|1|2|G|1726

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

RPL24A isoform 1

Chain w

40S ribosomal protein S6-A

Chain y

RPS8A isoform 1