IL_6XIR_224

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUA*UAAGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_224 not in the Motif Atlas

Homologous match to IL_8P9A_338

Geometric discrepancy: 0.206

The information below is about IL_8P9A_338

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07469.2

Basepair signature

cWW-tSH-cWW-cSH-R-cWW

Number of instances in this motif group

3

Unit IDs

6XIR|1|1|C|2889
6XIR|1|1|A|2890
6XIR|1|1|U|2891
6XIR|1|1|A|2892
*
6XIR|1|1|U|2909
6XIR|1|1|A|2910
6XIR|1|1|A|2911
6XIR|1|1|G|2912
6XIR|1|1|C|2913
6XIR|1|1|G|2914

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1

Chain V

60S ribosomal protein L23-A