IL_6XIR_225

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGGUGCAC*GGGUGCU

Length

16 nucleotides

Bulged bases

6XIR|1|1|C|3228, 6XIR|1|1|G|3229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|1|A|3227
6XIR|1|1|C|3228
6XIR|1|1|G|3229
6XIR|1|1|G|3230
6XIR|1|1|U|3231
6XIR|1|1|G|3232
6XIR|1|1|C|3233
6XIR|1|1|A|3234
6XIR|1|1|C|3235
*
6XIR|1|1|G|3252
6XIR|1|1|G|3253
6XIR|1|1|G|3254
6XIR|1|1|U|3255
6XIR|1|1|G|3256
6XIR|1|1|C|3257
6XIR|1|1|U|3258

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14-A