IL_6XIR_230

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGGGCAAG*CUC

Length

12 nucleotides

Bulged bases

6XIR|1|2|C|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_230 not in the Motif Atlas

Geometric match to IL_5AY2_001

Geometric discrepancy: 0.2607

The information below is about IL_5AY2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6XIR|1|2|G|549
6XIR|1|2|A|550
6XIR|1|2|G|551
6XIR|1|2|G|552
6XIR|1|2|G|553
6XIR|1|2|C|554
6XIR|1|2|A|555
6XIR|1|2|A|556
6XIR|1|2|G|557
*
6XIR|1|2|C|587
6XIR|1|2|U|588
6XIR|1|2|C|589

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain s

RPS2 isoform 1

Chain z

40S ribosomal protein S9-A