Loop IL_6XIR

3D structure

PDB id: 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Loop

Sequence: GAAAAAAUUAGAGUGUUCAAAGCAGG*CUCGAAUAUAUUAGC
Length: 41 nucleotides
Bulged bases: 6XIR|1|2|A|755, 6XIR|1|2|A|756, 6XIR|1|2|A|762, 6XIR|1|2|G|765, 6XIR|1|2|U|766, 6XIR|1|2|U|767, 6XIR|1|2|A|770, 6XIR|1|2|A|771, 6XIR|1|2|A|793
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6XIR|1|2|G|751
6XIR|1|2|A|752
6XIR|1|2|A|753
6XIR|1|2|A|754
6XIR|1|2|A|755
6XIR|1|2|A|756
6XIR|1|2|A|757
6XIR|1|2|U|758
6XIR|1|2|U|759
6XIR|1|2|A|760
6XIR|1|2|G|761
6XIR|1|2|A|762
6XIR|1|2|G|763
6XIR|1|2|U|764
6XIR|1|2|G|765
6XIR|1|2|U|766
6XIR|1|2|U|767
6XIR|1|2|C|768
6XIR|1|2|A|769
6XIR|1|2|A|770
6XIR|1|2|A|771
6XIR|1|2|G|772
6XIR|1|2|C|773
6XIR|1|2|A|774
6XIR|1|2|G|775
6XIR|1|2|G|776
*
6XIR|1|2|C|784
6XIR|1|2|U|785
6XIR|1|2|C|786
6XIR|1|2|G|787
6XIR|1|2|A|788
6XIR|1|2|A|789
6XIR|1|2|U|790
6XIR|1|2|A|791
6XIR|1|2|U|792
6XIR|1|2|A|793
6XIR|1|2|U|794
6XIR|1|2|U|795
6XIR|1|2|A|796
6XIR|1|2|G|797
6XIR|1|2|C|798

Current chains

Chain 2: 18S ribosomal RNA

Nearby chains

Chain AB: 40S ribosomal protein S11-A
Chain AM: RPS22A isoform 1
Chain AO: 40S ribosomal protein S24-A
Chain u: 40S ribosomal protein S4-A
Chain z: 40S ribosomal protein S9-A

IL_6XIR_231