IL_6XIR_235
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGCCAGCGA*UUGUGAAACUC
- Length
- 21 nucleotides
- Bulged bases
- 6XIR|1|2|C|1481, 6XIR|1|2|G|1521, 6XIR|1|2|G|1523, 6XIR|1|2|A|1525
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIR|1|2|G|1478
6XIR|1|2|A|1479
6XIR|1|2|G|1480
6XIR|1|2|C|1481
6XIR|1|2|C|1482
6XIR|1|2|A|1483
6XIR|1|2|G|1484
6XIR|1|2|C|1485
6XIR|1|2|G|1486
6XIR|1|2|A|1487
*
6XIR|1|2|U|1519
6XIR|1|2|U|1520
6XIR|1|2|G|1521
6XIR|1|2|U|1522
6XIR|1|2|G|1523
6XIR|1|2|A|1524
6XIR|1|2|A|1525
6XIR|1|2|A|1526
6XIR|1|2|C|1527
6XIR|1|2|U|1528
6XIR|1|2|C|1529
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AG
- 40S ribosomal protein S16-A
- Chain AJ
- 40S ribosomal protein S19-A
- Chain AK
- RPS20 isoform 1
- Chain AP
- RPS25A isoform 1
- Chain AT
- RPS29A isoform 1
- Chain t
- RPS3 isoform 1
- Chain v
- Rps5p
Coloring options: