IL_6XIR_238

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCUAGUACC*GAACUAAAAG

Length

20 nucleotides

Bulged bases

6XIR|1|2|U|1650, 6XIR|1|2|A|1749, 6XIR|1|2|A|1750, 6XIR|1|2|A|1756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|C|1644
6XIR|1|2|G|1645
6XIR|1|2|C|1646
6XIR|1|2|U|1647
6XIR|1|2|A|1648
6XIR|1|2|G|1649
6XIR|1|2|U|1650
6XIR|1|2|A|1651
6XIR|1|2|C|1652
6XIR|1|2|C|1653
*
6XIR|1|2|G|1748
6XIR|1|2|A|1749
6XIR|1|2|A|1750
6XIR|1|2|C|1751
6XIR|1|2|U|1752
6XIR|1|2|A|1753
6XIR|1|2|A|1754
6XIR|1|2|A|1755
6XIR|1|2|A|1756
6XIR|1|2|G|1757

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AN

40S ribosomal protein S23-A

Chain AZ

Transfer RNA; tRNA