IL_6XIR_240

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGAUCUGC*GCGGAGAAU

Length

18 nucleotides

Bulged bases

6XIR|1|2|C|1683, 6XIR|1|2|U|1684, 6XIR|1|2|G|1720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|A|1678
6XIR|1|2|G|1679
6XIR|1|2|G|1680
6XIR|1|2|A|1681
6XIR|1|2|U|1682
6XIR|1|2|C|1683
6XIR|1|2|U|1684
6XIR|1|2|G|1685
6XIR|1|2|C|1686
*
6XIR|1|2|G|1715
6XIR|1|2|C|1716
6XIR|1|2|G|1717
6XIR|1|2|G|1718
6XIR|1|2|A|1719
6XIR|1|2|G|1720
6XIR|1|2|A|1721
6XIR|1|2|A|1722
6XIR|1|2|U|1723

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain w

40S ribosomal protein S6-A

Chain y

RPS8A isoform 1