IL_6XIR_241

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAGAGAAGGG*CUCCAUCUCAGAG

Length

25 nucleotides

Bulged bases

6XIR|1|2|A|1689, 6XIR|1|2|G|1692, 6XIR|1|2|A|1694, 6XIR|1|2|G|1696, 6XIR|1|2|U|1704, 6XIR|1|2|C|1705, 6XIR|1|2|C|1706, 6XIR|1|2|C|1711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|C|1686
6XIR|1|2|U|1687
6XIR|1|2|U|1688
6XIR|1|2|A|1689
6XIR|1|2|G|1690
6XIR|1|2|A|1691
6XIR|1|2|G|1692
6XIR|1|2|A|1693
6XIR|1|2|A|1694
6XIR|1|2|G|1695
6XIR|1|2|G|1696
6XIR|1|2|G|1697
*
6XIR|1|2|C|1703
6XIR|1|2|U|1704
6XIR|1|2|C|1705
6XIR|1|2|C|1706
6XIR|1|2|A|1707
6XIR|1|2|U|1708
6XIR|1|2|C|1709
6XIR|1|2|U|1710
6XIR|1|2|C|1711
6XIR|1|2|A|1712
6XIR|1|2|G|1713
6XIR|1|2|A|1714
6XIR|1|2|G|1715

Current chains

Chain 2

18S ribosomal RNA

Nearby chains