IL_6XIR_252

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUGGCUUA*UUGGUCAUU

Length

18 nucleotides

Bulged bases

6XIR|1|2|U|1661, 6XIR|1|2|U|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|A|1659
6XIR|1|2|A|1660
6XIR|1|2|U|1661
6XIR|1|2|G|1662
6XIR|1|2|G|1663
6XIR|1|2|C|1664
6XIR|1|2|U|1665
6XIR|1|2|U|1666
6XIR|1|2|A|1667
*
6XIR|1|2|U|1734
6XIR|1|2|U|1735
6XIR|1|2|G|1736
6XIR|1|2|G|1737
6XIR|1|2|U|1738
6XIR|1|2|C|1739
6XIR|1|2|A|1740
6XIR|1|2|U|1741
6XIR|1|2|U|1742

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AN

40S ribosomal protein S23-A

Chain V

60S ribosomal protein L23-A