IL_6XJQ_005

3D structure

PDB id

6XJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a self-alkylating ribozyme - alkylated form with biotinylated epoxide substrate

Experimental method

X-RAY DIFFRACTION

Resolution

1.708 Å

Loop

Sequence

AGAAG*CGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XJQ_005 not in the Motif Atlas

Geometric match to IL_6XJQ_002

Geometric discrepancy: 0.219

The information below is about IL_6XJQ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48444.6

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6XJQ|1|B|A|10
6XJQ|1|B|G|11
6XJQ|1|B|A|12
6XJQ|1|B|A|13
6XJQ|1|B|G|14
*
6XJQ|1|B|C|48
6XJQ|1|B|G|49
6XJQ|1|B|A|50
6XJQ|1|B|U|51

Current chains

Chain B

Self-alkylating ribozyme (58-MER)

Nearby chains