IL_6XMF_002

3D structure

PDB id

6XMF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Cas12g binary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAGUCAUCUG*CG

Length

12 nucleotides

Bulged bases

6XMF|1|C|A|14, 6XMF|1|C|U|19, 6XMF|1|C|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XMF_002 not in the Motif Atlas

Geometric match to IL_5J7L_315

Geometric discrepancy: 0.1447

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6XMF|1|C|U|13
6XMF|1|C|A|14
6XMF|1|C|G|15
6XMF|1|C|U|16
6XMF|1|C|C|17
6XMF|1|C|A|18
6XMF|1|C|U|19
6XMF|1|C|C|20
6XMF|1|C|U|21
6XMF|1|C|G|22
*
6XMF|1|C|C|71
6XMF|1|C|G|72

Current chains

Chain C

RNA (116-MER)

Nearby chains

Chain A

CRISPR-Cas