IL_6XMF_005

3D structure

PDB id

6XMF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Cas12g binary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGCG*CAAUGG

Length

11 nucleotides

Bulged bases

6XMF|1|C|U|55

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XMF_005 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3562

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

6XMF|1|C|C|35
6XMF|1|C|C|36
6XMF|1|C|G|37
6XMF|1|C|C|38
6XMF|1|C|G|39
*
6XMF|1|C|C|52
6XMF|1|C|A|53
6XMF|1|C|A|54
6XMF|1|C|U|55
6XMF|1|C|G|56
6XMF|1|C|G|57

Current chains

Chain C

RNA (116-MER)

Nearby chains

Chain A

CRISPR-Cas