IL_6XQD_045

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6XQD|1|1A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_045 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0538

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6XQD|1|1A|C|1208
6XQD|1|1A|G|1209
6XQD|1|1A|A|1210
6XQD|1|1A|U|1211
6XQD|1|1A|G|1212
6XQD|1|1A|A|1213
6XQD|1|1A|A|1214
6XQD|1|1A|G|1215
*
6XQD|1|1A|U|1234
6XQD|1|1A|G|1235
6XQD|1|1A|G|1236
6XQD|1|1A|A|1237
6XQD|1|1A|G|1238

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20